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I Want To...
| Please Try... |
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Align sequences |
Local,
Global,
Multiple or
Profile
Alignments, or
Editing & Presentation of alignments and
Alignment Related programs
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| • |
Find antigenic sites |
antigenicity predicting programs |
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Assemble a sequence |
Staden
GCG
Other assembly software |
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Check codon usage |
Codon Usage programs |
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Complement a sequence |
Complementation and/or reversal programs |
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Determine sequence composition |
Composition programs |
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Create, display or match a consensus sequence |
Consensus programs,
Web logos |
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Find CpG regions |
CpG related programs |
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Digest a sequence |
for a nucleotide or
peptide sequence |
| • |
DNA structure |
see DNA properties |
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Make dot plots |
Several dot plot programs |
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Edit a sequence |
Editing programs |
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Find genes |
Local gene finding programs |
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Hydrophobicity calculations |
Local hydropathy programs |
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Find the isoelectric point |
Isoelectric programs |
| • |
Map a sequence digest |
for a nucleotide or
peptide sequence |
| • |
Find sequence patterns |
The pattern programs |
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Design a primer |
Primer programs or on the web with
Primer3 |
| • |
Create randomised sequences |
Shuffling software |
| • |
Reformat a sequence |
Into GCG format,
From GCG format,
General sequence reformatting |
| • |
Search a database |
Try the BLAST page,
the FastA page; or
the database search page |
| • |
Search the draft human genome |
Try the
Ensembl Blast Server,
or the
Human Blast Server at the
Sanger Centre |
| • |
Predict protein secondary structure |
Local secondary structure programs,
at the PHD server
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Predict RNA secondary structure |
programs for RNA/DNA structure prediction |
| • |
Find structural motifs |
Some structure prediction programs |
| • |
Translate a sequence |
Translation programs |
| • |
Find common words |
Local word matching programs |
